> For the complete documentation index, see [llms.txt](https://kb.ezbiocloud.net/home/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://kb.ezbiocloud.net/home/science-blogs/profile/ubcg-set.md). # UBCG Set This document describes the gene set included in the current version of the UBCG phylogenomics pipeline \[[Learn more](/home/science-blogs/profile/ubcg-technical-guide.md)]. | Gene | COG category | COG ID | HMM profile | Function | | ---- | ------------ | ------- | ----------------- | ------------------------------------------------------ | | alaS | J | COG0013 | TIGR00344 | Alanine-tRNA ligase | | argS | J | COG0018 | TIGR00456 | Arginine-tRNA ligase | | aspS | J | COG0173 | TIGR00459 | Aspartate-tRNA ligase | | cgtA | DL | COG0536 | TIGR02729/PF01018 | GTPase ObgE/CgtA | | coaE | H | COG0237 | TIGR00152 | Dephospho-CoA kinase | | cysS | J | COG0215 | TIGR00435 | Cysteine-tRNA ligase | | dnaA | L | COG0593 | TIGR00362/PF00308 | Chromosomal replication initiator protein DnaA | | dnaG | L | COG0358 | TIGR01391 | DNA primase | | dnaX | L | COG2812 | TIGR02397 | DNA polymerase III subunit gamma | | engA | R | COG1160 | TIGR03594 | GTPase Der | | ffh | U | COG0541 | TIGR00959 | Signal recognition particle protein | | fmt | J | COG0223 | TIGR00460 | Methionyl-tRNA formyltransferase | | frr | J | COG0233 | TIGR00496 | Ribosome-recycling factor | | ftsY | U | COG0552 | TIGR00064 | Signal recognition particle receptor FtsY | | gmk | F | COG0194 | TIGR03263/PF00625 | Guanylate kinase | | hisS | J | COG0124 | TIGR00442 | Histidine-tRNA ligase | | ileS | J | COG0060 | TIGR00392 | Isoleucine-tRNA ligase 1 | | infB | J | COG0532 | TIGR00487 | Translation initiation factor IF-2 | | infC | J | COG0290 | TIGR00168 | Translation initiation factor IF-3 | | ksgA | J | COG0030 | TIGR00755 | Ribosomal RNA small subunit methyltransferase A | | lepA | J | COG0481 | TIGR01393 | Elongation factor 4 | | leuS | J | COG0495 | TIGR00396 | Leucine-tRNA ligase | | ligA | L | COG0272 | TIGR00575 | DNA ligase | | nusA | K | COG0195 | TIGR01953 | Transcription termination/antitermination protein NusA | | nusG | K | COG0250 | TIGR00922 | Transcription termination/antitermination protein NusG | | pgk | G | COG0126 | PF00162 | Phosphoglycerate kinase | | pheS | J | COG0016 | TIGR00468 | Phenylalanine-tRNA ligase alpha subunit | | pheT | J | COG0073 | TIGR00472 | Phenylalanine-tRNA ligase beta subunit | | prfA | J | COG0216 | TIGR00019 | Peptide chain release factor 1 | | pyrG | F | COG0504 | TIGR00337 | CTP synthase | | recA | L | COG0468 | TIGR02012 | DNA recombination and repair protein | | rbfA | J | COG0858 | TIGR00082 | 30S ribosome-binding factor | | rnc | K | COG0571 | TIGR02191 | Ribonuclease 3 | | rplA | J | COG0081 | TIGR01169 | 50S ribosomal protein L1 | | rplB | J | COG0090 | TIGR01171 | 50S ribosomal protein L2 | | rplC | J | COG0087 | TIGR03625/PF00297 | 50S ribosomal protein L3 | | rplD | J | COG0088 | TIGR03953 | 50S ribosomal protein L4 | | rplE | J | COG0094 | PF00281 | 50S ribosomal protein L5 | | rplF | J | COG0097 | TIGR03654/PF00347 | 50S ribosomal protein L6 | | rplI | J | COG0359 | TIGR00158/PF01281 | 50S ribosomal protein L9 | | rplJ | J | COG0244 | PF00466 | 50S ribosomal protein L10 | | rplK | J | COG0080 | TIGR01632 | 50S ribosomal protein L11 | | rplL | J | COG0222 | TIGR00855 | 50S ribosomal protein L7/L12 | | rplM | J | COG0102 | TIGR01066 | 50S ribosomal protein L13 | | rplN | J | COG0093 | TIGR01067 | 50S ribosomal protein L14 | | rplO | J | COG0200 | TIGR01071 | 50S ribosomal protein L15 | | rplP | J | COG0197 | TIGR01164 | 50S ribosomal protein L16 | | rplQ | J | COG0203 | TIGR00059 | 50S ribosomal protein L17 | | rplR | J | COG0256 | TIGR00060 | 50S ribosomal protein L18 | | rplS | J | COG0335 | TIGR01024 | 50S ribosomal protein L19 | | rplT | J | COG0292 | TIGR01032 | 50S ribosomal protein L20 | | rplU | J | COG0261 | TIGR00061 | 50S ribosomal protein L21 | | rplV | J | COG0091 | TIGR01044 | 50S ribosomal protein L22 | | rplW | J | COG0089 | PF00276 | 50S ribosomal protein L23 | | rplX | J | COG0198 | TIGR01079 | 50S ribosomal protein L24 | | rpmA | J | COG0211 | TIGR00062 | 50S ribosomal protein L27 | | rpmC | J | COG0255 | TIGR00012 | 50S ribosomal protein L29 | | rpmI | J | COG0291 | TIGR00001 | 50S ribosomal protein L35 | | rpoA | K | COG0202 | TIGR02027 | DNA-directed RNA polymerase subunit alpha | | rpoB | K | COG0085 | TIGR02013 | DNA-directed RNA polymerase subunit beta | | rpoC | K | COG0086 | TIGR02386 | DNA-directed RNA polymerase subunit beta’ | | rpsB | J | COG0052 | TIGR01011 | 30S ribosomal protein S2 | | rpsC | J | COG0092 | TIGR01009 | 30S ribosomal protein S3 | | rpsD | J | COG0522 | TIGR01017 | 30S ribosomal protein S4 | | rpsE | J | COG0098 | TIGR01021 | 30S ribosomal protein S5 | | rpsF | J | COG0360 | TIGR00166/PF01250 | 30S ribosomal protein S6 | | rpsG | J | COG0049 | TIGR01029 | 30S ribosomal protein S7 | | rpsH | J | COG0096 | PF00410 | 30S ribosomal protein S8 | | rpsI | J | COG0103 | PF00380 | 30S ribosomal protein S9 | | rpsJ | J | COG0051 | TIGR01049 | 30S ribosomal protein S10 | | rpsK | J | COG0100 | TIGR03632 | 30S ribosomal protein S11 | | rpsL | J | COG0048 | TIGR00981 | 30S ribosomal protein S12 | | rpsM | J | COG0099 | TIGR03631 | 30S ribosomal protein S13 | | rpsO | J | COG0184 | TIGR00952 | 30S ribosomal protein S15 | | rpsP | J | COG0228 | TIGR00002 | 30S ribosomal protein S16 | | rpsQ | J | COG0186 | TIGR03635 | 30S ribosomal protein S17 | | rpsR | J | COG0238 | TIGR00165 | 30S ribosomal protein S18 | | rpsS | J | COG0185 | TIGR01050 | 30S ribosomal protein S19 | | rpsT | J | COG0268 | TIGR00029 | 30S ribosomal protein S20 | | secA | U | COG0653 | TIGR00963 | Protein translocase subunit SecA | | secG | U | COG1314 | TIGR00810 | Protein-export membrane protein SecG | | secY | U | COG0201 | TIGR00967 | Protein translocase subunit SecY | | serS | J | COG0172 | TIGR00414 | Serine-tRNA ligase | | smpB | O | COG0691 | TIGR00086 | SsrA-binding protein | | tig | O | COG0544 | TIGR00115 | Trigger factor | | tilS | J | COG0037 | TIGR02432 | tRNA(Ile)-lysidine synthase | | truB | J | COG0130 | TIGR00431 | tRNA pseudouridine synthase B | | tsaD | J | COG0533 | TIGR03723 | tRNA N6-adenosine threonylcarbamoyltransferase | | tsf | J | COG0264 | TIGR00116/PF00889 | Elongation factor Ts | | uvrB | L | COG0556 | TIGR00631 | UvrABC system protein B | | ybeY | J | COG0319 | TIGR00043 | Endoribonuclease YbeY | | ychF | J | COG0012 | TIGR00092 | Ribosome-binding ATPase YchF |

Location of UBCG genes on Escherichia coli K12 genome