UBCG Set
Here you can see which genes compose the Up-to-date Bacteria Core Gene set.
This document describes the gene set included in the current version of the UBCG phylogenomics pipeline [Learn more].
alaS
J
COG0013
TIGR00344
Alanine-tRNA ligase
argS
J
COG0018
TIGR00456
Arginine-tRNA ligase
aspS
J
COG0173
TIGR00459
Aspartate-tRNA ligase
cgtA
DL
COG0536
TIGR02729/PF01018
GTPase ObgE/CgtA
coaE
H
COG0237
TIGR00152
Dephospho-CoA kinase
cysS
J
COG0215
TIGR00435
Cysteine-tRNA ligase
dnaA
L
COG0593
TIGR00362/PF00308
Chromosomal replication initiator protein DnaA
dnaG
L
COG0358
TIGR01391
DNA primase
dnaX
L
COG2812
TIGR02397
DNA polymerase III subunit gamma
engA
R
COG1160
TIGR03594
GTPase Der
ffh
U
COG0541
TIGR00959
Signal recognition particle protein
fmt
J
COG0223
TIGR00460
Methionyl-tRNA formyltransferase
frr
J
COG0233
TIGR00496
Ribosome-recycling factor
ftsY
U
COG0552
TIGR00064
Signal recognition particle receptor FtsY
gmk
F
COG0194
TIGR03263/PF00625
Guanylate kinase
hisS
J
COG0124
TIGR00442
Histidine-tRNA ligase
ileS
J
COG0060
TIGR00392
Isoleucine-tRNA ligase 1
infB
J
COG0532
TIGR00487
Translation initiation factor IF-2
infC
J
COG0290
TIGR00168
Translation initiation factor IF-3
ksgA
J
COG0030
TIGR00755
Ribosomal RNA small subunit methyltransferase A
lepA
J
COG0481
TIGR01393
Elongation factor 4
leuS
J
COG0495
TIGR00396
Leucine-tRNA ligase
ligA
L
COG0272
TIGR00575
DNA ligase
nusA
K
COG0195
TIGR01953
Transcription termination/antitermination protein NusA
nusG
K
COG0250
TIGR00922
Transcription termination/antitermination protein NusG
pgk
G
COG0126
PF00162
Phosphoglycerate kinase
pheS
J
COG0016
TIGR00468
Phenylalanine-tRNA ligase alpha subunit
pheT
J
COG0073
TIGR00472
Phenylalanine-tRNA ligase beta subunit
prfA
J
COG0216
TIGR00019
Peptide chain release factor 1
pyrG
F
COG0504
TIGR00337
CTP synthase
recA
L
COG0468
TIGR02012
DNA recombination and repair protein
rbfA
J
COG0858
TIGR00082
30S ribosome-binding factor
rnc
K
COG0571
TIGR02191
Ribonuclease 3
rplA
J
COG0081
TIGR01169
50S ribosomal protein L1
rplB
J
COG0090
TIGR01171
50S ribosomal protein L2
rplC
J
COG0087
TIGR03625/PF00297
50S ribosomal protein L3
rplD
J
COG0088
TIGR03953
50S ribosomal protein L4
rplE
J
COG0094
PF00281
50S ribosomal protein L5
rplF
J
COG0097
TIGR03654/PF00347
50S ribosomal protein L6
rplI
J
COG0359
TIGR00158/PF01281
50S ribosomal protein L9
rplJ
J
COG0244
PF00466
50S ribosomal protein L10
rplK
J
COG0080
TIGR01632
50S ribosomal protein L11
rplL
J
COG0222
TIGR00855
50S ribosomal protein L7/L12
rplM
J
COG0102
TIGR01066
50S ribosomal protein L13
rplN
J
COG0093
TIGR01067
50S ribosomal protein L14
rplO
J
COG0200
TIGR01071
50S ribosomal protein L15
rplP
J
COG0197
TIGR01164
50S ribosomal protein L16
rplQ
J
COG0203
TIGR00059
50S ribosomal protein L17
rplR
J
COG0256
TIGR00060
50S ribosomal protein L18
rplS
J
COG0335
TIGR01024
50S ribosomal protein L19
rplT
J
COG0292
TIGR01032
50S ribosomal protein L20
rplU
J
COG0261
TIGR00061
50S ribosomal protein L21
rplV
J
COG0091
TIGR01044
50S ribosomal protein L22
rplW
J
COG0089
PF00276
50S ribosomal protein L23
rplX
J
COG0198
TIGR01079
50S ribosomal protein L24
rpmA
J
COG0211
TIGR00062
50S ribosomal protein L27
rpmC
J
COG0255
TIGR00012
50S ribosomal protein L29
rpmI
J
COG0291
TIGR00001
50S ribosomal protein L35
rpoA
K
COG0202
TIGR02027
DNA-directed RNA polymerase subunit alpha
rpoB
K
COG0085
TIGR02013
DNA-directed RNA polymerase subunit beta
rpoC
K
COG0086
TIGR02386
DNA-directed RNA polymerase subunit beta’
rpsB
J
COG0052
TIGR01011
30S ribosomal protein S2
rpsC
J
COG0092
TIGR01009
30S ribosomal protein S3
rpsD
J
COG0522
TIGR01017
30S ribosomal protein S4
rpsE
J
COG0098
TIGR01021
30S ribosomal protein S5
rpsF
J
COG0360
TIGR00166/PF01250
30S ribosomal protein S6
rpsG
J
COG0049
TIGR01029
30S ribosomal protein S7
rpsH
J
COG0096
PF00410
30S ribosomal protein S8
rpsI
J
COG0103
PF00380
30S ribosomal protein S9
rpsJ
J
COG0051
TIGR01049
30S ribosomal protein S10
rpsK
J
COG0100
TIGR03632
30S ribosomal protein S11
rpsL
J
COG0048
TIGR00981
30S ribosomal protein S12
rpsM
J
COG0099
TIGR03631
30S ribosomal protein S13
rpsO
J
COG0184
TIGR00952
30S ribosomal protein S15
rpsP
J
COG0228
TIGR00002
30S ribosomal protein S16
rpsQ
J
COG0186
TIGR03635
30S ribosomal protein S17
rpsR
J
COG0238
TIGR00165
30S ribosomal protein S18
rpsS
J
COG0185
TIGR01050
30S ribosomal protein S19
rpsT
J
COG0268
TIGR00029
30S ribosomal protein S20
secA
U
COG0653
TIGR00963
Protein translocase subunit SecA
secG
U
COG1314
TIGR00810
Protein-export membrane protein SecG
secY
U
COG0201
TIGR00967
Protein translocase subunit SecY
serS
J
COG0172
TIGR00414
Serine-tRNA ligase
smpB
O
COG0691
TIGR00086
SsrA-binding protein
tig
O
COG0544
TIGR00115
Trigger factor
tilS
J
COG0037
TIGR02432
tRNA(Ile)-lysidine synthase
truB
J
COG0130
TIGR00431
tRNA pseudouridine synthase B
tsaD
J
COG0533
TIGR03723
tRNA N6-adenosine threonylcarbamoyltransferase
tsf
J
COG0264
TIGR00116/PF00889
Elongation factor Ts
uvrB
L
COG0556
TIGR00631
UvrABC system protein B
ybeY
J
COG0319
TIGR00043
Endoribonuclease YbeY
ychF
J
COG0012
TIGR00092
Ribosome-binding ATPase YchF
Last updated