> For the complete documentation index, see [llms.txt](https://kb.ezbiocloud.net/home/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://kb.ezbiocloud.net/home/protocols/shotgun-microbiome/analyze-datasets/co-occurrence-spearman.md).

# Co-occurrence Spearman

Let’s run a **Co-occurrence Spearman** analysis of the profiles in this dataset from the Parkinson’s disease study.

## Select ‘Co-occurrence Spearman’ <a href="#span-classeztocsection-idselecte28098cooccurrencespearmanspanselect-cooccurrence-spearman-span-class" id="span-classeztocsection-idselecte28098cooccurrencespearmanspanselect-cooccurrence-spearman-span-class"></a>

<figure><img src="https://820779907-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FDWKOAVP0eaMhg1acSkor%2Fuploads%2FMpNHTaxecSq0kY5ZlNaA%2Fimage.png?alt=media&amp;token=02adcada-e69a-47cd-a594-0d6b46804879" alt=""><figcaption></figcaption></figure>

## Select your dataset <a href="#span-classeztocsection-idselectyourdatasetspanselect-your-dataset-span-classeztocsectionendspan" id="span-classeztocsection-idselectyourdatasetspanselect-your-dataset-span-classeztocsectionendspan"></a>

<figure><img src="https://820779907-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FDWKOAVP0eaMhg1acSkor%2Fuploads%2FEC31xpMecf4QPRGBJMSM%2Fimage.png?alt=media&amp;token=8f5ce863-a02a-4702-877d-d73119ee69b1" alt=""><figcaption></figcaption></figure>

## Fill in details for future referencing <a href="#span-classeztocsection-idfillindetailsforfuturereferencingspanfill-in-details-for-future-referencing" id="span-classeztocsection-idfillindetailsforfuturereferencingspanfill-in-details-for-future-referencing"></a>

## Input the arguments according to your desired output <a href="#span-classeztocsection-idinputtheargumentsaccordingtoyourdesiredoutputspaninput-the-arguments-accord" id="span-classeztocsection-idinputtheargumentsaccordingtoyourdesiredoutputspaninput-the-arguments-accord"></a>

<figure><img src="https://820779907-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FDWKOAVP0eaMhg1acSkor%2Fuploads%2FXDJbJeTfEtBGDgH1a7HQ%2Fimage.png?alt=media&amp;token=489567d4-16a9-40ae-a54a-375f2f11ac37" alt=""><figcaption></figcaption></figure>

## Select ‘Run Analysis’ <a href="#span-classeztocsection-idselecte28098runanalysisspanselect-run-analysisspan-classeztocsectionendspan" id="span-classeztocsection-idselecte28098runanalysisspanselect-run-analysisspan-classeztocsectionendspan"></a>

<figure><img src="https://820779907-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FDWKOAVP0eaMhg1acSkor%2Fuploads%2FwO1JDSVVZvHk0BjJ0tnK%2Fimage.png?alt=media&amp;token=6b772263-30d7-426e-9f99-780ffe414aaa" alt=""><figcaption></figcaption></figure>

## Wait for the analysis to complete <a href="#span-classeztocsection-idwaitfortheanalysistocompletespanwait-for-the-analysis-to-completespan-class" id="span-classeztocsection-idwaitfortheanalysistocompletespanwait-for-the-analysis-to-completespan-class"></a>

<figure><img src="https://820779907-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FDWKOAVP0eaMhg1acSkor%2Fuploads%2FM30JzTtjUzFCqtnV8opQ%2Fimage.png?alt=media&amp;token=93581bf5-7520-4dfd-bade-a883c5960fe0" alt=""><figcaption></figcaption></figure>

<figure><img src="https://820779907-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FDWKOAVP0eaMhg1acSkor%2Fuploads%2FtGWQE2Iw7lNF9WSBUA9S%2Fimage.png?alt=media&amp;token=38d951d8-1ebf-4547-ae71-e0ce7e57950f" alt=""><figcaption></figcaption></figure>