UBCG Set

Here you can see which genes compose the Up-to-date Bacteria Core Gene set.

This document describes the gene set included in the current version of the UBCG phylogenomics pipeline [Learn more].

Gene	COG category	COG ID	HMM profile	Function
alaS	J	COG0013	TIGR00344	Alanine-tRNA ligase
argS	J	COG0018	TIGR00456	Arginine-tRNA ligase
aspS	J	COG0173	TIGR00459	Aspartate-tRNA ligase
cgtA	DL	COG0536	TIGR02729/PF01018	GTPase ObgE/CgtA
coaE	H	COG0237	TIGR00152	Dephospho-CoA kinase
cysS	J	COG0215	TIGR00435	Cysteine-tRNA ligase
dnaA	L	COG0593	TIGR00362/PF00308	Chromosomal replication initiator protein DnaA
dnaG	L	COG0358	TIGR01391	DNA primase
dnaX	L	COG2812	TIGR02397	DNA polymerase III subunit gamma
engA	R	COG1160	TIGR03594	GTPase Der
ffh	U	COG0541	TIGR00959	Signal recognition particle protein
fmt	J	COG0223	TIGR00460	Methionyl-tRNA formyltransferase
frr	J	COG0233	TIGR00496	Ribosome-recycling factor
ftsY	U	COG0552	TIGR00064	Signal recognition particle receptor FtsY
gmk	F	COG0194	TIGR03263/PF00625	Guanylate kinase
hisS	J	COG0124	TIGR00442	Histidine-tRNA ligase
ileS	J	COG0060	TIGR00392	Isoleucine-tRNA ligase 1
infB	J	COG0532	TIGR00487	Translation initiation factor IF-2
infC	J	COG0290	TIGR00168	Translation initiation factor IF-3
ksgA	J	COG0030	TIGR00755	Ribosomal RNA small subunit methyltransferase A
lepA	J	COG0481	TIGR01393	Elongation factor 4
leuS	J	COG0495	TIGR00396	Leucine-tRNA ligase
ligA	L	COG0272	TIGR00575	DNA ligase
nusA	K	COG0195	TIGR01953	Transcription termination/antitermination protein NusA
nusG	K	COG0250	TIGR00922	Transcription termination/antitermination protein NusG
pgk	G	COG0126	PF00162	Phosphoglycerate kinase
pheS	J	COG0016	TIGR00468	Phenylalanine-tRNA ligase alpha subunit
pheT	J	COG0073	TIGR00472	Phenylalanine-tRNA ligase beta subunit
prfA	J	COG0216	TIGR00019	Peptide chain release factor 1
pyrG	F	COG0504	TIGR00337	CTP synthase
recA	L	COG0468	TIGR02012	DNA recombination and repair protein
rbfA	J	COG0858	TIGR00082	30S ribosome-binding factor
rnc	K	COG0571	TIGR02191	Ribonuclease 3
rplA	J	COG0081	TIGR01169	50S ribosomal protein L1
rplB	J	COG0090	TIGR01171	50S ribosomal protein L2
rplC	J	COG0087	TIGR03625/PF00297	50S ribosomal protein L3
rplD	J	COG0088	TIGR03953	50S ribosomal protein L4
rplE	J	COG0094	PF00281	50S ribosomal protein L5
rplF	J	COG0097	TIGR03654/PF00347	50S ribosomal protein L6
rplI	J	COG0359	TIGR00158/PF01281	50S ribosomal protein L9
rplJ	J	COG0244	PF00466	50S ribosomal protein L10
rplK	J	COG0080	TIGR01632	50S ribosomal protein L11
rplL	J	COG0222	TIGR00855	50S ribosomal protein L7/L12
rplM	J	COG0102	TIGR01066	50S ribosomal protein L13
rplN	J	COG0093	TIGR01067	50S ribosomal protein L14
rplO	J	COG0200	TIGR01071	50S ribosomal protein L15
rplP	J	COG0197	TIGR01164	50S ribosomal protein L16
rplQ	J	COG0203	TIGR00059	50S ribosomal protein L17
rplR	J	COG0256	TIGR00060	50S ribosomal protein L18
rplS	J	COG0335	TIGR01024	50S ribosomal protein L19
rplT	J	COG0292	TIGR01032	50S ribosomal protein L20
rplU	J	COG0261	TIGR00061	50S ribosomal protein L21
rplV	J	COG0091	TIGR01044	50S ribosomal protein L22
rplW	J	COG0089	PF00276	50S ribosomal protein L23
rplX	J	COG0198	TIGR01079	50S ribosomal protein L24
rpmA	J	COG0211	TIGR00062	50S ribosomal protein L27
rpmC	J	COG0255	TIGR00012	50S ribosomal protein L29
rpmI	J	COG0291	TIGR00001	50S ribosomal protein L35
rpoA	K	COG0202	TIGR02027	DNA-directed RNA polymerase subunit alpha
rpoB	K	COG0085	TIGR02013	DNA-directed RNA polymerase subunit beta
rpoC	K	COG0086	TIGR02386	DNA-directed RNA polymerase subunit beta’
rpsB	J	COG0052	TIGR01011	30S ribosomal protein S2
rpsC	J	COG0092	TIGR01009	30S ribosomal protein S3
rpsD	J	COG0522	TIGR01017	30S ribosomal protein S4
rpsE	J	COG0098	TIGR01021	30S ribosomal protein S5
rpsF	J	COG0360	TIGR00166/PF01250	30S ribosomal protein S6
rpsG	J	COG0049	TIGR01029	30S ribosomal protein S7
rpsH	J	COG0096	PF00410	30S ribosomal protein S8
rpsI	J	COG0103	PF00380	30S ribosomal protein S9
rpsJ	J	COG0051	TIGR01049	30S ribosomal protein S10
rpsK	J	COG0100	TIGR03632	30S ribosomal protein S11
rpsL	J	COG0048	TIGR00981	30S ribosomal protein S12
rpsM	J	COG0099	TIGR03631	30S ribosomal protein S13
rpsO	J	COG0184	TIGR00952	30S ribosomal protein S15
rpsP	J	COG0228	TIGR00002	30S ribosomal protein S16
rpsQ	J	COG0186	TIGR03635	30S ribosomal protein S17
rpsR	J	COG0238	TIGR00165	30S ribosomal protein S18
rpsS	J	COG0185	TIGR01050	30S ribosomal protein S19
rpsT	J	COG0268	TIGR00029	30S ribosomal protein S20
secA	U	COG0653	TIGR00963	Protein translocase subunit SecA
secG	U	COG1314	TIGR00810	Protein-export membrane protein SecG
secY	U	COG0201	TIGR00967	Protein translocase subunit SecY
serS	J	COG0172	TIGR00414	Serine-tRNA ligase
smpB	O	COG0691	TIGR00086	SsrA-binding protein
tig	O	COG0544	TIGR00115	Trigger factor
tilS	J	COG0037	TIGR02432	tRNA(Ile)-lysidine synthase
truB	J	COG0130	TIGR00431	tRNA pseudouridine synthase B
tsaD	J	COG0533	TIGR03723	tRNA N6-adenosine threonylcarbamoyltransferase
tsf	J	COG0264	TIGR00116/PF00889	Elongation factor Ts
uvrB	L	COG0556	TIGR00631	UvrABC system protein B
ybeY	J	COG0319	TIGR00043	Endoribonuclease YbeY
ychF	J	COG0012	TIGR00092	Ribosome-binding ATPase YchF

Location of UBCG genes on Escherichia coli K12 genome