# LEfSe

Let’s run a **LEfSe** analysis of the profiles in this dataset from the Parkinson’s disease study.

## Select ‘LEfSe’ <a href="#span-classeztocsection-idselecte28098lefsespanselect-lefse-span-classeztocsectionendspan" id="span-classeztocsection-idselecte28098lefsespanselect-lefse-span-classeztocsectionendspan"></a>

<figure><img src="https://820779907-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FDWKOAVP0eaMhg1acSkor%2Fuploads%2Fb0XVa9Dsfy0IrSA044hr%2Fimage.png?alt=media&#x26;token=d6301e49-1323-49b2-a913-bdef68433290" alt=""><figcaption></figcaption></figure>

## Select your dataset <a href="#span-classeztocsection-idselectyourdatasetspanselect-your-dataset-span-classeztocsectionendspan" id="span-classeztocsection-idselectyourdatasetspanselect-your-dataset-span-classeztocsectionendspan"></a>

<figure><img src="https://820779907-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FDWKOAVP0eaMhg1acSkor%2Fuploads%2F6yHvtENERXppLDTmTLD8%2Fimage.png?alt=media&#x26;token=b14dbc25-f1d4-4f76-80a1-6daa79019806" alt=""><figcaption></figcaption></figure>

## Fill in details for future referencing <a href="#span-classeztocsection-idfillindetailsforfuturereferencingspanfill-in-details-for-future-referencing" id="span-classeztocsection-idfillindetailsforfuturereferencingspanfill-in-details-for-future-referencing"></a>

## Input the arguments according to your desired output <a href="#span-classeztocsection-idinputtheargumentsaccordingtoyourdesiredoutputspaninput-the-arguments-accord" id="span-classeztocsection-idinputtheargumentsaccordingtoyourdesiredoutputspaninput-the-arguments-accord"></a>

<figure><img src="https://820779907-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FDWKOAVP0eaMhg1acSkor%2Fuploads%2FiE3QUKxoqJm5V6AcXphf%2Fimage.png?alt=media&#x26;token=424e77cb-7be6-4f60-8883-ebd4a0dc1aa0" alt=""><figcaption></figcaption></figure>

## Select ‘Run Analysis’ <a href="#span-classeztocsection-idselecte28098runanalysisspanselect-run-analysisspan-classeztocsectionendspan" id="span-classeztocsection-idselecte28098runanalysisspanselect-run-analysisspan-classeztocsectionendspan"></a>

<figure><img src="https://820779907-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FDWKOAVP0eaMhg1acSkor%2Fuploads%2FkfltgVNE307aVRYAG2Rs%2Fimage.png?alt=media&#x26;token=30319d1b-03b9-4072-8b19-b9ff6140101c" alt=""><figcaption></figcaption></figure>

## Wait for the analysis to complete <a href="#span-classeztocsection-idwaitfortheanalysistocompletespanwait-for-the-analysis-to-completespan-class" id="span-classeztocsection-idwaitfortheanalysistocompletespanwait-for-the-analysis-to-completespan-class"></a>

<figure><img src="https://820779907-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FDWKOAVP0eaMhg1acSkor%2Fuploads%2F8VoTyAWEVFLpZxmL3GJt%2Fimage.png?alt=media&#x26;token=989b62a4-6add-4675-a79a-82cdba2def9f" alt=""><figcaption></figcaption></figure>

<figure><img src="https://820779907-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FDWKOAVP0eaMhg1acSkor%2Fuploads%2Fboj9Ck32yZOqUNnRuAIX%2Fimage.png?alt=media&#x26;token=7e32c0c4-c72f-450f-b83b-db049dfd65d6" alt=""><figcaption></figcaption></figure>