> For the complete documentation index, see [llms.txt](https://kb.ezbiocloud.net/home/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://kb.ezbiocloud.net/home/protocols.md).

# Protocols

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[16S rRNA Identification](/home/protocols/16s-identification.md)

[Genome Identification](/home/protocols/genome-identification.md)

[Shotgun Microbiome](/home/protocols/shotgun-microbiome.md)

[Clinical Metagenomics](/home/protocols/clinical-metagenomics.md)\
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Feel free to navigate through them in tandem with our app to discover what is in your samples.

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[**16S Identification**](https://www.ezbiocloudpro.app/)

Enables batch upload for multiple sample analysis, species-level identification via 16S, query sequence analysis, display of top taxonomic matches, visualization of phylogenetic trees, and illustration of sequence alignments.

[**Genome Identification**](https://www.ezbiocloudpro.app/)

Identifies microbial genomes, assesses average nucleotide identity, analyzes sequencing metrics, detects viral genomes, characterizes strains, identifies antibiotic resistance, pathogenicity markers, virulence factors, and displays top genomic similarities.

[**Shotgun Microbiome**](https://www.ezbiocloudpro.app/)

Assesses data integrity, analyzes microbial populations and diversity, identifies biomarkers, detects abundance variations, evaluates microbial correlations, explores sample characteristics, investigates microbial profiles, and classifies microbial communities.

[**Clinical Metagenomics**](https://www.ezbiocloudpro.app/)

Analyzes sequencing metrics, detects bacterial, fungal, and viral pathogens, identifies antibiotic resistance genes, virulence factor genes, and assesses putative pathogenic agents associated with infections.

[View All Services](https://www.ezbiocloudpro.app/)