# Tools

***

## ANI Calculator

<div align="center"><figure><img src="https://www.ezbiocloud.net/images/ezbiocloud/icon/icon_cal.png" alt="" width="188"><figcaption></figcaption></figure></div>

Average Nucleotide Identity (ANI) is an online calculator used to compare two prokaryotic genome sequences.

{% embed url="<https://www.ezbiocloud.net/tools/ani>" %}
Visit the tool's main page [here](https://www.ezbiocloud.net/tools/ani)
{% endembed %}

***

## Pairwise Nucleotide Sequence Alignment For Taxonomy

<figure><img src="https://www.ezbiocloud.net/images/ezbiocloud/icon/icon_Pairwise.png" alt="" width="188"><figcaption></figcaption></figure>

Pairwise aligner performs online alignment of given pair of DNA sequences.

{% embed url="<https://www.ezbiocloud.net/tools/pairAlign>" %}
Visit the tool's main page [here](https://www.ezbiocloud.net/tools/pairAlign)
{% endembed %}

***

## UBCG (Phylogenomic tree inference using bacterial core genes)

<figure><img src="https://www.ezbiocloud.net/images/ezbiocloud/icon/icon_ubcg.png" alt="" width="188"><figcaption></figcaption></figure>

One of the most popular bioinformatic pipelines for genome-based phylogenetic inference of Bacteria. Phylogenomic trees can be obtained from the genome assemblies. [>360 times cited](https://scholar.google.com/scholar?cites=17032773367383986397\&as_sdt=2005\&sciodt=0,5)

{% embed url="<https://www.ezbiocloud.net/tools/ubcg>" %}
Visit the tool's main page [here](https://www.ezbiocloud.net/tools/ubcg)
{% endembed %}

{% embed url="<https://www.ezbiocloud.net/tools/ubcg_viewer>" %}
Visit the bcg file viewer [here](https://www.ezbiocloud.net/tools/ubcg_viewer)
{% endembed %}

***

## UBCG2 (Up-to-date Bacterial Core Genes 2)

<figure><img src="https://www.ezbiocloud.net/images/ezbiocloud/icon/icon_ubcg2.png" alt="" width="188"><figcaption></figcaption></figure>

UBCG is a pipeline tool to infer a highly resolved phylogenetic tree using core gene set, pre-defined with the up-to-date high quality genome database.

{% embed url="<http://leb.snu.ac.kr/ubcg2>" %}
Visit the tool's main page [here](http://leb.snu.ac.kr/ubcg2)
{% endembed %}

***

## UACG (Phylogenomic tree inference using archaeal core genes)

<figure><img src="https://www.ezbiocloud.net/images/ezbiocloud/icon/icon_uacg.png" alt="" width="188"><figcaption></figcaption></figure>

Phylogenomic trees can be inferred using UACG for archaeal species. Try phylogenomic analysis with UACG.

{% embed url="<https://www.ezbiocloud.net/tools/uacg>" %}
Visit the tool's main page [here](https://www.ezbiocloud.net/tools/uacg)
{% endembed %}

***

## UFCG (Universal Fungal Core Genes)

<figure><img src="https://www.ezbiocloud.net/images/ezbiocloud/icon/icon_ufcg.png" alt="" width="188"><figcaption></figcaption></figure>

Analyze your fungal sequences with Universal Fungal Core Genes (UFCG). UFCG provides the database and pipeline for a fully automated phylogenetic analysis with a novel set of fungal core genes.

{% embed url="<https://ufcg.steineggerlab.com/>" %}
Visit the tool's main page [here](https://ufcg.steineggerlab.com/)
{% endembed %}

***

## EzAAI (Average amino acid sequence identity tool)

<figure><img src="https://820779907-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FDWKOAVP0eaMhg1acSkor%2Fuploads%2FhUrvVgnI56qMrIxHCFvo%2Fimage.png?alt=media&#x26;token=57f2ef91-50c2-44f2-86a1-13fd04693185" alt=""><figcaption></figcaption></figure>

Average amino acid sequence identity (AAI) is an objective way of accessing taxonomic structure of genus or higher taxa. EzAAI provides rapid and accurate pipeline from the genome assemblies to the final dendrogram.

{% embed url="<http://leb.snu.ac.kr/ezaai>" %}
Visit the tool's main page [here](http://leb.snu.ac.kr/ezaai)
{% endembed %}

***

## OrthoANI-usearch tool

<figure><img src="https://www.ezbiocloud.net/images/ezbiocloud/icon/icon_oau.png" alt="" width="188"><figcaption></figcaption></figure>

OrthoANI-usearch (OrthoANIu) is a standalone software used to calculate OrthoANI using USEARCH. For large genomes, it is >100 X faster than BLAST-based ANI algorithms.

{% embed url="<https://www.ezbiocloud.net/tools/orthoaniu>" %}
Visit the tool's main page [here](https://www.ezbiocloud.net/tools/orthoaniu)
{% endembed %}

***

## OrthoANI

<figure><img src="https://www.ezbiocloud.net/images/ezbiocloud/icon/icon_orthoani.png" alt="" width="188"><figcaption></figcaption></figure>

Orthologous Average Nucleotide Identity Tool (OAT) is a standalone software used to perform OrthoANI algorithm and BLAST calculations to measure the overall similarity between two genomes sequences.

{% embed url="<https://www.ezbiocloud.net/tools/orthoani>" %}
Visit the tool's main page [here](https://www.ezbiocloud.net/tools/orthoani)
{% endembed %}

***

## ContEst16S

<figure><img src="https://www.ezbiocloud.net/images/ezbiocloud/icon/icon_contest.png" alt="" width="188"><figcaption></figcaption></figure>

ContEst16S is a web service that enables the detection of potential contaminants in your bacterial or archaeal draft genome assemblies.

{% embed url="<https://www.ezbiocloud.net/tools/contest16s>" %}
Visit the tool's main page [here](https://www.ezbiocloud.net/tools/contest16s)
{% endembed %}

***

## EzEditor2

<figure><img src="https://www.ezbiocloud.net/images/ezbiocloud/icon/icon_ezeditor.png" alt="" width="188"><figcaption></figcaption></figure>

EzEditor2 is a new and improved iteration of the original EzEditor software.

{% embed url="<https://www.ezbiocloud.net/tools/ezeditor2>" %}
Visit the tool's main page [here](https://www.ezbiocloud.net/tools/ezeditor2)
{% endembed %}

***

## EzBioCloud's Label Replacer

<figure><img src="https://www.ezbiocloud.net/images/ezbiocloud/icon/labelreplacer.png" alt="" width="188"><figcaption></figcaption></figure>

This tool can be used to replace zZ-formated labels with the desired formats in Newick or other text files.

{% embed url="<https://www.ezbiocloud.net/tools/labelreplacer>" %}
Visit the tool's main page [here ](https://www.ezbiocloud.net/tools/labelreplacer)
{% endembed %}